Local view for "http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/DB08266"
Predicate | Value (sorted: none) |
---|---|
drugbank:description |
"
experimental
This compound belongs to the dihydropyranones. These are compounds containing an hydrogenated pyran ring which bears a ketone, and contains one double bond.
Dihydropyranones
Organic Compounds
Heterocyclic Compounds
Pyrans
Pyranones and Derivatives
Dicarboxylic Acids and Derivatives
Acryloyl Compounds
Enones
Shiff Bases
Carboxylic Acid Esters
Polyamines
Enolates
Ethers
Enols
dicarboxylic acid derivative
acryloyl-group
enone
carboxylic acid ester
aldimine
ketone
shiff base
ether
enolate
enol
polyamine
carboxylic acid derivative
amine
carbonyl group
imine
organonitrogen compound
logP
4.39
ALOGPS
logS
-5.4
ALOGPS
Water Solubility
1.73e-03 g/l
ALOGPS
logP
4.54
ChemAxon
IUPAC Name
methyl N-[(1E,5R)-5-[(3S)-3-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl]hexylidene]carbamate
ChemAxon
Traditional IUPAC Name
methyl N-[(1E,5R)-5-[(5S)-5-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-4,6-dioxo-5H-pyran-2-yl]hexylidene]carbamate
ChemAxon
Molecular Weight
417.4953
ChemAxon
Monoisotopic Weight
417.215137729
ChemAxon
SMILES
[H][C@@](C)(CCC\C=N\C(=O)OC)C1=CC(=O)[C@@]([H])(C(=O)C(\C)=C\C=C(/C)CCC)C(=O)O1
ChemAxon
Molecular Formula
C23H31NO6
ChemAxon
InChI
InChI=1S/C23H31NO6/c1-6-9-15(2)11-12-17(4)21(26)20-18(25)14-19(30-22(20)27)16(3)10-7-8-13-24-23(28)29-5/h11-14,16,20H,6-10H2,1-5H3/b15-11+,17-12+,24-13+/t16-,20+/m1/s1
ChemAxon
InChIKey
InChIKey=LTDLIPXLSBMTFP-HQCMHGIWSA-N
ChemAxon
Polar Surface Area (PSA)
99.1
ChemAxon
Refractivity
116.4
ChemAxon
Polarizability
45.49
ChemAxon
Rotatable Bond Count
11
ChemAxon
H Bond Acceptor Count
5
ChemAxon
H Bond Donor Count
0
ChemAxon
pKa (strongest acidic)
0.98
ChemAxon
pKa (strongest basic)
-2.5
ChemAxon
Physiological Charge
-1
ChemAxon
Number of Rings
1
ChemAxon
Bioavailability
1
ChemAxon
Rule of Five
true
ChemAxon
Ghose Filter
true
ChemAxon
PubChem Compound
46937136
PubChem Substance
99444737
PDB
NE6
BE0004261
DNA-directed RNA polymerase subunit alpha
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
DNA-directed RNA polymerase subunit alpha
Transcription
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
rpoA
Cytoplasmic
None
4.64
35012.9
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GeneCards
rpoA
GenBank Gene Database
AB024328
GenBank Protein Database
4519419
UniProtKB
Q5SHR6
UniProt Accession
RPOA_THET8
RNA polymerase subunit alpha
RNAP subunit alpha
Transcriptase subunit alpha
>DNA-directed RNA polymerase subunit alpha
MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIED
VLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADV
EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQ
VEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAK
EPEAPPEQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLE
EIKEALEKKGFTLKE
>114 bp
ATGAAGGTGCGCGCGTCGGTCAAGAGGATCTGCGACAAGTGCAAGGTGATCCGCCGGCAC
GGGCGGGTCTACGTCATCTGCGAGAACCCCAAGCATAAGCAGCGGCAGGGTTAG
PF01000
RNA_pol_A_bac
PF03118
RNA_pol_A_CTD
PF01193
RNA_pol_L
component
cell
component
intracellular
function
protein binding
function
protein dimerization activity
function
transferase activity
function
transferase activity, transferring phosphorus-containing groups
function
nucleic acid binding
function
binding
function
DNA binding
function
catalytic activity
function
nucleotidyltransferase activity
function
DNA-directed RNA polymerase activity
process
transcription, DNA-dependent
process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
process
physiological process
process
metabolism
process
cellular metabolism
process
transcription
BE0003367
DNA-directed RNA polymerase subunit beta
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
DNA-directed RNA polymerase subunit beta
Involved in DNA binding
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
rpoB
Cytoplasmic
None
5.73
125266.0
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GenBank Gene Database
AB083789
UniProtKB
Q8RQE9
UniProt Accession
RPOB_THET8
EC 2.7.7.6
RNA polymerase subunit beta
RNAP beta subunit
Transcriptase beta chain
>DNA-directed RNA polymerase beta chain
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG
KGGLVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPL
MTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNG
VVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT
LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKD
EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERML
MGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTR
ERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT
DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVF
SVNTNLIPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEED
GEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRVRKGDLLADGPA
SENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE
RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGE
KARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLA
NRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQR
YISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE
EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQP
LGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPS
VPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR
>3360 bp
ATGGAGATCAAGCGGTTCGGTCGCATCCGAGAGGTTATCCCCCTTCCACCCCTCACCGAG
ATCCAGGTGGAGTCCTACCGCAGGGCCCTGCAGGCCGACGTCCCCCCGGAGAAGCGGGAG
AACGTCGGCATCCAGGCGGCCTTCCGGGAGACCTTCCCCATTGAGGAGGAGGACAAGGGC
AAGGGCGGTTTGGTGCTGGACTTCCTGGAGTACCGCCTGGGCGAGCCCCCCTTCCCCCAG
GACGAGTGCCGGGAGAAGGACCTCACCTACCAGGCCCCCCTCTACGCCCGGCTCCAGCTC
ATCCACAAGGACACGGGCCTCATCAAGGAGGACGAGGTCTTCCTGGGGCACATCCCCCTG
ATGACCGAGGACGGCTCCTTCATCATCAACGGGGCCGACCGGGTCATCGTCTCCCAGATC
CACCGCTCCCCCGGGGTCTACTTCACCCCCGACCCCGCCCGGCCCGGGCGCTACATCGCC
AGCATCATCCCCCTGCCCAAGCGGGGCCCCTGGATTGACCTGGAGGTGGAGCCGAACGGC
GTCGTCTCCATGAAGGTCAACAAGCGGAAGTTCCCCCTGGTCCTCCTCCTTCGGGTCCTG
GGGTACGACCAGGAGACCCTGGCCCGGGAGCTTGGGGCCTACGGGGAGCTGGTCCAGGGC
CTCATGGACGAGAGCGTCTTCGCCATGCGCCCCGAGGAGGCTCTGATCCGCCTCTTCACC
CTCCTCCGCCCCGGGGACCCGCCCAAGCGGGACAAGGCCGTGGCCTACGTCTACGGCCTC
ATCGCCGACCCCAGGCGGTACGACCTGGGCGAGGCCGGGCGGTACAAGGCGGAGGAGAAG
CTGGGGATCCGCCTCTCGGGCCGCACCCTGGCCCGCTTTGAGGACGGGGAGTTCAAGGAC
GAGGTCTTCCTCCCCACCCTCCGCTACCTCTTCGCCCTCACCGCCGGGGTCCCGGGCCAC
GAGGTGGACGACATTGACCACCTGGGCAACCGCCGCATCCGCACCGTGGGGGAGCTCATG
ACCGACCAGTTCCGGGTGGGGCTCGCCCGCCTCGCCCGGGGGGTGCGGGAGCGGATGCTC
ATGGGCTCGGAGGACAGCCTCACCCCGGCCAAGCTGGTGAACAGCCGCCCCTTGGAGGCC
GCCATCCGGGAGTTCTTCAGCCGCAGCCAGCTTTCCCAGTTCAAGGACGAGACCAACCCC
CTCTCCTCCCTGCGCCACAAGCGGCGGATCTCCGCCCTGGGCCCGGGCGGCCTCACCCGG
GAGCGGGCGGGGTTTGACGTGCGCGACGTCCACCGCACCCACTACGGGCGCATCTGCCCC
GTGGAGACCCCCGAGGGCGCCAACATCGGCCTCATCACCTCCTTGGCGGCCTACGCCCGG
GTGGACGAGCTGGGCTTCATCCGCACCCCCTACCGCCGGGTGGTGGGCGGGGTGGTCACC
GACGAGGTGGTCTACATGACGGCCACCGAGGAGGACCGCTACACCATCGCCCAGGCCAAC
ACCCCCCTGGAGGGGAACCGGATCGCGGCCGAGCGGGTGGTGGCCCGGAGGAAGGGGGAG
CCCGTGATCGTGAGCCCGGAAGAGGTGGAGTTCATGGACGTCTCCCCCAAGCAGGTCTTC
TCCGTGAACACCAACCTCATTCCCTTCCTGGAGCACGACGACGCCAACCGGGCCCTCATG
GGCTCCAACATGCAGACCCAGGCCGTGCCCCTCATCCGGGCCCAGGCCCCCGTGGTGATG
ACGGGCCTCGAGGAGCGGGTGGTGCGGGACTCCCTGGCCGCCCTCTACGCCGAGGAGGAC
GGGGAGGTGGCCAAGGTGGACGGCAACCGCATCGTCGTGCGCTACGAGGACGGCCGCCTG
GTGGAGTACCCCTTGCGCCGCTTCTACCGCTCCAACCAGGGTACGGCCCTGGACCAGCGC
CCCCGGGTGGTGGTGGGGCAGCGGGTGCGCAAAGGGGACCTCCTCGCCGACGGCCCCGCC
TCCGAGAACGGCTTCCTGGCCCTGGGGCAGAACGTCCTCGTGGCCATCATGCCCTTTGAC
GGGTACAACTTTGAGGACGCCATCGTCATCAGCGAGGAGCTCCTCAAGCGGGACTTCTAC
ACCTCCATCCACATTGAGCGCTACGAGATTGAGGCCCGGGACACCAAGCTTGGCCCCGAG
CGGATCACCCGGGACATCCCCCACCTCTCCGAGGCCGCCCTAAGGGACCTGGACGAGGAG
GGCGTGGTGCGCATCGGCGCCGAGGTGAAGCCCGGGGACATCCTCGTGGGGCGGACCAGC
TTCAAGGGCGAGTCCGAGCCCACCCCCGAGGAGAGGCTCCTCCGCTCCATCTTCGGCGAG
AAGGCCCGGGACGTGAAGGACACCTCCCTCCGGGTGCCGCCCGGCGAAGGGGGGATCGTG
GTCCGCACCGTCCGGCTGCGGCGGGGCGACCCCGGGGTGGAGCTCAAGCCCGGGGTGCGG
GAGGTGGTCCGGGTCTACGTGGCCCAGAAGCGCAAGCTCCAGGTGGGGGACAAGCTCGCC
AACCGCCACGGGAACAAGGGGGTGGTGGCCAAGATCCTCCCCGTGGAGGACATGCCCCAC
CTGCCCGACGGCACCCCCGTGGACGTGATCCTGAACCCCCTGGGCGTCCCCAGCCGGATG
AACCTGGGGCAGATCCTGGAGACCCACCTGGGCCTCGCCGGGTACTTCCTGGGCCAGCGC
TACATCTCCCCCATCTTTGACGGGGCCAAGGAGCCCGAGATCAAGGAGCTCCTCGCCCAG
GCCTTTGAGGTCTACTTCGGCAAGCGCAAGGGCGAGGGCTTCGGCGTGGACAAGCGGGAG
GTGGAGGTCCTCCGCCGGGCGGAGAAGCTCGGCCTCGTCACCCCGGGCAAGACCCCGGAG
GAGCAGCTTAAGGAGCTCTTCCTCCAGGGCAAGGTGGTCCTCTACGACGGCCGCACGGGC
GAGCCCATTGAGGGCCCCATCGTGGTGGGACAGATGTTCATCATGAAGCTCTACCACATG
GTGGAGGACAAGATGCACGCCCGCTCCACGGGGCCCTACTCCCTCATCACCCAGCAGCCC
CTGGGCGGGAAGGCCCAGTTCGGCGGCCAGCGCTTCGGGGAGATGGAGGTCTGGGCCCTC
GAGGCCTATGGGGCGGCCCACACCCTCCAGGAGATGCTCACCCTTAAGTCCGACGACATT
GAGGGCAGGAACGCCGCCTACGAGGCCATCATCAAGGGGGAGGACGTTCCCGAGCCCAGC
GTCCCCGAGTCCTTCCGCGTGCTGGTGAAGGAGCTCCAGGCCTTGGCCTTGGACGTGCAG
ACCCTGGACGAGAAGGACAACCCCGTGGACATCTTTGAGGGGTTGGCCTCCAAGCGGTGA
PF04563
RNA_pol_Rpb2_1
PF04561
RNA_pol_Rpb2_2
PF04565
RNA_pol_Rpb2_3
PF00562
RNA_pol_Rpb2_6
PF04560
RNA_pol_Rpb2_7
function
catalytic activity
function
transferase activity
function
transferase activity, transferring phosphorus-containing groups
function
nucleic acid binding
function
DNA binding
function
nucleotidyltransferase activity
function
binding
function
DNA-directed RNA polymerase activity
process
metabolism
process
cellular metabolism
process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
process
physiological process
process
transcription
BE0003368
DNA-directed RNA polymerase subunit beta'
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
DNA-directed RNA polymerase subunit beta'
Involved in DNA binding
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
rpoC
Cytoplasmic
None
6.32
170759.0
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GenBank Gene Database
AB083790
UniProtKB
Q8RQE8
UniProt Accession
RPOC_THET8
EC 2.7.7.6
RNA polymerase beta' subunit
RNAP beta' subunit
Transcriptase beta' chain
>DNA-directed RNA polymerase beta' chain
MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECAC
GKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSA
TELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK
DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE
ILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK
GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR
VEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDV
LADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEE
MKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDL
NDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPL
RSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKK
MEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVL
VEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAK
PSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLK
YVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELI
QLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEK
KQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPL
YVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKG
GADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADI
EAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGV
CQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI
ELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVE
AGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVE
VTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASF
QNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARK
EAVEAKERPAARRGVKREQPGKQA
>4575 bp
ATGAAAAAAGAGGTTCGTAAGGTTCGCATCGCTTTGGCCTCCCCGGAGAAGATCCGCTCC
TGGAGCTACGGGGAGGTGGAGAAGCCCGAGACCATCAACTACCGCACCCTCAAGCCCGAG
CGGGACGGCCTCTTTGACGAGCGCATCTTCGGCCCCATCAAGGACTACGAGTGCGCCTGC
GGCAAGTACAAGCGCCAGCGCTTTGAGGGCAAGGTGTGCGAGCGGTGTGGCGTGGAGGTG
ACGAAGAGCATCGTCCGCCGCTACCGCATGGGGCACATTGAGCTCGCCACCCCCGCCGCC
CACATCTGGTTCGTCAAGGACGTCCCCTCCAAGATCGGGACCCTCCTGGACCTTTCCGCC
ACCGAGCTGGAGCAGGTCCTCTACTTCAGCAAGTACATCGTCTTGGATCCCAAGGGGGCC
ATCCTGAACGGGGTCCCGGTGGAGAAGCGCCAGCTCCTCACCGACGAGGAGTACCGGGAG
CTCCGCTACGGCAAGCAGGAGACCTACCCCCTGCCCCCCGGGGTGGACGCGCTGGTGAAG
GACGGGGAGGAGGTGGTAAAGGGCCAGGAGCTTGCCCCCGGGGTGGTGAGCCGCCTGGAC
GGCGTGGCCCTCTACCGCTTCCCCCGCCGCGTCCGGGTGGAGTACGTGAAGAAGGAGCGG
GCCGGGCTCAGGCTTCCCCTCGCCGCCTGGGTGGAGAAGGAGGCCTACAAGCCCGGCGAA
ATCCTCGCCGAGCTCCCCGAGCCCTACCTCTTCCGGGCCGAGGAGGAGGGCGTGGTGGAG
CTTAAGGAGCTGGAGGAAGGGGCTTTCCTCGTCCTCCGCCGGGAGGACGAGCCGGTGGCC
ACCTACTTCCTCCCCGTGGGCATGACGCCCCTCGTGGTCCACGGGGAGATCGTGGAGAAG
GGCCAGCCCCTGGCCGAGGCCAAGGGCCTTCTCCGCATGCCCCGCCAGGTCCGGGCCGCC
CAGGTGGAGGCGGAGGAGGAGGGGGAGACGGTCTACCTCACCCTCTTCCTGGAGTGGACG
GAGCCCAAGGACTACCGCGTCCAGCCCCACATGAACGTGGTGGTCCCCGAGGGGGCCCGG
GTGGAGGCGGGGGACAAGATCGTGGCCGCCATTGACCCCGAGGAGGAGGTCATCGCCGAG
GCCGAGGGGGTGGTCCACCTCCACGAGCCCGCCAGCATCCTGGTGGTCAAGGCCCGGGTC
TACCCCTTTGAGGACGACGTGGAGGTTTCCACCGGGGACCGGGTGGCCCCGGGGGACGTC
CTCGCCGACGGGGGCAAGGTCAAAAGCGACGTCTACGGCCGGGTGGAGGTGGACCTGGTC
CGCAACGTGGTCCGGGTGGTGGAGTCCTACGACATTGACGCCCGCATGGGGGCCGAGGCC
ATCCAGCAGCTCCTCAAGGAGCTGGACCTCGAGGCCCTGGAGAAGGAGCTTCTGGAGGAG
ATGAAGCACCCCTCCCGGGCCCGGCGGGCCAAGGCCAGGAAGCGCCTGGAGGTGGTGCGG
GCCTTCCTGGACTCGGGGAACCGGCCCGAGTGGATGATCCTCGAGGCCGTCCCCGTCCTT
CCCCCGGACCTCCGGCCCATGGTCCAGGTGGACGGCGGCCGCTTCGCCACGAGCGACCTC
AACGACCTCTACCGCCGCCTCATCAACCGCAACAACCGGCTGAAGAAGCTCTTGGCCCAG
GGGGCCCCCGAGATCATCATCCGCAACGAGAAGCGGATGCTCCAGGAGGCGGTGGACGCC
CTCCTGGACAACGGCCGCCGCGGCGCTCCCGTGACCAACCCCGGCTCCGACCGGCCCCTC
CGTAGCCTCACCGACATCCTCTCCGGCAAGCAGGGCCGCTTCCGCCAGAACCTCTTGGGC
AAGCGGGTGGACTACTCGGGCCGGAGCGTGATCGTGGTGGGGCCCCAGCTCAAGCTCCAC
CAGTGCGGCCTGCCCAAGCGGATGGCCCTGGAGCTCTTCAAGCCCTTCCTCCTCAAGAAG
ATGGAGGAGAAGGGCATCGCCCCCAACGTCAAGGCGGCGCGGCGCATGCTGGAGCGCCAG
CGGGACATCAAGGACGAGGTGTGGGACGCCTTGGAGGAGGTGATCCACGGCAAGGTGGTC
CTCTTGAACCGCGCCCCCACCCTGCACCGCTTGGGCATCCAGGCCTTCCAGCCCGTCTTG
GTGGAGGGGCAGTCCATCCAGCTCCACCCCCTGGTCTGCGAGGCCTTCAACGCCGACTTT
GACGGGGACCAGATGGCCGTCCACGTCCCCCTCTCCTCCTTCGCCCAGGCCGAGGCCCGC
ATCCAGATGCTCTCCGCCCACAACCTCCTCTCCCCGGCCTCCGGGGAGCCCCTGGCCAAG
CCCAGCCGGGACATCATCCTGGGCCTCTACTACATCACCCAGGTGCGCAAGGAGAAGAAG
GGGGCGGGCCTGGAGTTCGCCACCCCCGAGGAGGCCCTGGCCGCCCACGAGCGGGGAGAG
GTGGCCCTGAACGCCCCCATCAAGGTGGCGGGCAGGGAGACCAGCGTGGGCCGGCTCAAG
TACGTCTTCGCCAACCCCGACGAGGCCCTCCTCGCCGTGGCCCACGGCATCGTGGACCTG
CAGGACGTGGTCACCGTCCGCTACATGGGCAAGCGGCTGGAGACGAGCCCGGGCCGCATC
CTCTTCGCCCGCATCGTGGCCGAGGCGGTGGAGGACGAGAAGGTGGCCTGGGAGCTCATC
CAGCTGGACGTGCCCCAGGAGAAGAACTCCCTCAAGGACCTGGTCTACCAGGCCTTCCTC
CGCCTGGGGATGGAGAAGACCGCCAGGCTCCTGGACGCCCTCAAGTACTACGGCTTCACC
TTCTCCACCACGAGCGGCATCACCATCGGCATTGACGACGCCGTGATCCCGGAGGAGAAG
AAGCAGTACCTGGAGGAGGCCGACCGCAAGCTCCTCCAGATTGAGCAGGCCTACGAGATG
GGCTTCCTCACCGACCGGGAGCGGTACGACCAGATCCTCCAGCTCTGGACCGAGACCACG
GAGAAGGTCACCCAGGCGGTCTTCAAGAACTTTGAGGAGAACTACCCCTTCAACCCCCTC
TACGTCATGGCCCAGTCCGGGGCCCGGGGCAACCCGCAGCAGATCCGCCAGCTCTGCGGC
CTGCGCGGCCTCATGCAGAAGCCCTCGGGCGAGACCTTTGAGGTGCCGGTGCGCTCCTCC
TTCCGCGAGGGCCTCACCGTCTTGGAGTACTTCATCTCCAGCCACGGGGCCCGTAAGGGC
GGGGCGGACACCGCCCTCCGCACCGCCGACTCCGGCTACCTCACCCGCAAGCTCGTGGAC
GTGACCCACGAGATCGTGGTGCGGGAGGCGGACTGCGGCACCACCAACTACATCTCCGTT
CCCCTCTTCCAGCCCGACGAGGTGACCCGCTCCTTGCGCCTGAGGAAGCGCGCGGACATT
GAGGCGGGCCTCTACGGGCGCGTCCTGGCCCGGGAGGTGGAGGTCCTGGGGGTGCGCCTC
GAGGAGGGCCGCTACCTCTCCATGGACGACGTCCACCTCCTCATCAAGGCCGCCGAGGCC
GGGGAGATCCAGGAGGTGCCCGTCCGCAGCCCCCTCACCTGCCAGACCCGCTACGGGGTC
TGCCAGAAGTGCTACGGGTACGACCTCTCCATGGCCCGGCCCGTCTCCATCGGCGAGGCG
GTGGGCATCGTGGCCGCCCAGTCCATCGGCGAGCCCGGCACCCAGCTCACCATGCGCACC
TTCCACACGGGCGGCGTGGCCGGGGCCGCGGACATCACCCAGGGTCTGCCCCGCGTCATT
GAGCTCTTTGAGGCCCGGCGCCCCAAGGCCAAGGCGGTGATCTCCGAGATTGACGGGGTG
GTGCGCATTGAGGAGACGGAGGAGAAGCTCTCCGTCTTCGTGGAGTCCGAGGGCTTCTCC
AAGGAGTACAAGCTCCCCAAGGAGGCGCGCCTTCTCGTCAAGGACGGGGACTACGTGGAG
GCGGGCCAGCCCCTCACCCGCGGGGCCATTGACCCCCACCAGCTCTTGGAGGCCAAGGGC
CCCGAGGCGGTGGAGCGCTACCTGGTGGAGGAGATCCAGAAGGTCTACCGGGCCCAGGGC
GTGAAGCTGCACGACAAGCACATTGAGATCGTGGTCCGGCAGATGATGAAGTACGTGGAG
GTCACCGACCCCGGGGACAGCCGCCTCCTCGAGGGCCAGGTCCTGGAGAAGTGGGACGTG
GAGGCCCTGAACGAGAGGCTCATCGCCGAGGGCAAGACCCCGGTGGCCTGGAAGCCCCTC
CTCATGGGGGTCACGAAGAGCGCCCTCTCCACCAAGAGCTGGCTCTCCGCCGCCAGCTTC
CAGAACACCACCCACGTCCTCACCGAGGCGGCCATCGCCGGGAAGAAGGACGAGCTCATC
GGCCTCAAGGAGAACGTCATCCTGGGCCGCCTGATCCCGGCGGGCACGGGTTCGGACTTC
GTCCGCTTCACCCAGGTGGTGGACCAGAAGACCCTGAAGGCCATTGAGGAGGCCCGCAAG
GAGGCGGTGGAGGCCAAGGAGCGGCCCGCCGCCCGGCGCGGGGTCAAGCGGGAGCAGCCC
GGCAAGCAGGCTTAA
PF04997
RNA_pol_Rpb1_1
PF00623
RNA_pol_Rpb1_2
PF04983
RNA_pol_Rpb1_3
PF05000
RNA_pol_Rpb1_4
PF04998
RNA_pol_Rpb1_5
component
intracellular membrane-bound organelle
component
nucleus
component
organelle
component
membrane-bound organelle
function
transferase activity, transferring phosphorus-containing groups
function
nucleic acid binding
function
binding
function
DNA binding
function
catalytic activity
function
nucleotidyltransferase activity
function
DNA-directed RNA polymerase activity
function
transferase activity
process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
process
physiological process
process
metabolism
process
cellular metabolism
process
transcription
BE0003369
DNA-directed RNA polymerase subunit omega
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
DNA-directed RNA polymerase subunit omega
Involved in DNA-directed RNA polymerase activity
Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity)
rpoZ
Cytoplasmic
None
4.96
11518.0
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GenBank Gene Database
AB083791
UniProtKB
Q8RQE7
UniProt Accession
RPOZ_THET8
EC 2.7.7.6
RNA polymerase omega subunit
RNAP omega subunit
Transcriptase omega chain
>DNA-directed RNA polymerase omega chain
MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNA
VTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVEREE
>300 bp
ATGGCGGAACCGGGCATTGACAAGCTCTTCGGCATGGTGGACTCCAAGTACCGGCTCACC
GTGGTGGTGGCCAAAAGGGCGCAGCAGCTCCTCCGCCACGGCTTCAAGAACACGGTCTTG
GAGCCGGAAGAGAGGCCCAAGATGCAGACCCTCGAGGGGCTTTTTGACGACCCCAACGCC
GAGACCTGGGCCATGAAGGAGCTCCTCACGGGCCGGTTGGTCTTCGGGGAGAACCTGGTG
CCCGAGGACCGGCTGCAAAAGGAGATGGAGCGGATCTACCCGGGGGAGCGAGAGGAGTAA
PF01192
RNA_pol_Rpb6
function
transferase activity
function
transferase activity, transferring phosphorus-containing groups
function
nucleic acid binding
function
DNA binding
function
nucleotidyltransferase activity
function
binding
function
DNA-directed RNA polymerase activity
function
catalytic activity
process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
process
physiological process
process
transcription
process
transcription, DNA-dependent
process
metabolism
process
cellular metabolism
BE0003370
RNA polymerase sigma factor
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
# Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The Protein Data Bank. Nucleic Acids Res. 2000 Jan 1;28(1):235-42. "Pubmed":http://www.ncbi.nlm.nih.gov/pubmed/10592235
unknown
RNA polymerase sigma factor
Involved in catalytic activity
TTHA0532
Cytoplasmic
None
4.77
48525.0
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GenBank Gene Database
AP008226
UniProtKB
Q5SKW1
UniProt Accession
Q5SKW1_THET8
RpoD
>RNA polymerase pricipal sigma factor
MKKSKRKNAQAQEAQETEVLVQEEAEELPEFPEGEPDPDLEDPDLTLEDDLLDLPEEGEG
LDLEEEEEDLPIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEIT
GLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREG
EAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYAT
WWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWD
AKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSK
LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRD
FLD
>1272 bp
TTAGTCCAGGAAGTCCCTGAGCTTCCGCGTGCGGGACTCGTGGTACTTGAGCTTGCGGAG
GGCCTTGTTCTCAATCTGCCGGATCCTTTCCCGGGTGACGCCGAAGAAGGCCCCCACCTC
CTCCAGGGTGTGCTCCCGCCCGTCAATGAGCCCTTTCCGGAGCTTCAGGACCATGGCCTC
GCGCTCGGAGAGCTTGGACAGGGCCTTCTCCAGCTCCTCGGAGAGGAGGCTCTGGGTGGC
GGCGTCCACCGGGGAGGGGAGGTGCTCGTCGGGGATGAAGTCCCCGTAGAAGCTGTCCTT
CTCGTCGCCGATGGGGGTCTCCAGGGAGACGGGCTCCTGGGCGATCTTGAGGGTTTCCTC
CACCCGCTTGGCGTCCCAGCCCGGCCCCATGGCCTCGGCGATCTCCTCGTAGGTGGGTTC
CCGGCCGAGCTCCTGCTGCAGCTGCCTTGCGGTGCGGGAGAGCTTGTTGATGGTCTCCAC
CATGTGGACCGGGATGCGGATGGTGCGGGCCTGGTCGGCGATGGCCCGGTTGATGGCCTG
CCGGATCCACCAGGTGGCGTAGGTGGAGAACTTGAAGCGCCGCTTGTACTCAAACTTCTC
CACCGCCCGGATCAGGCCCTGGTTTCCCTCCTGGATGAGGTCCAGGAAGGAGAGGCCCCG
CCCCGTGTACTTCTTGGCGATGGAGACCACGAGCCGGAGGTTGGCCTCAATGAGGTGCTG
CCGGGCCGCCTCCCCTTCCCGGGCGATGTGGAGGTAGCGCTTGTGCTCCTTGGGGAGGCT
TTTGAGCTTCTGGTCAATCTCCTCCACGGTCTTGGGGTCCAGGGTCTCCTTGAGGCCGGG
GATGTGCCGCACCCGGGCCGAGCCCAGAATCTTGGCCCGGACCACCTCCCGGATGAGGTC
GGGGTCAAGGCCGGTGATCTCGGAGAGCTTCTTGATGGCCTCCATCCCCTCCTCCACCTT
CCGGGCGAGCTCCACCTCCTCCTCCAGGGTGAGGAGGGGGACCTGGCCGATCTCGTGCAG
GTACTGGCGCACGGGGTCGGAGGTGGAGATCTTGGGGATGGGGAGGTCTTCTTCCTCCTC
CTCCAGGTCCAGCCCCTCGCCCTCCTCGGGCAGGTCCAGGAGGTCGTCCTCCAGGGTGAG
GTCCGGGTCCTCGAGGTCGGGGTCGGGCTCCCCCTCGGGGAACTCGGGGAGTTCCTCCGC
CTCCTCCTGGACCAGGACCTCGGTCTCCTGGGCCTCCTGGGCCTGGGCGTTCTTGCGCTT
GCTCTTCTTCAA
PF00140
Sigma70_r1_2
PF04542
Sigma70_r2
PF04539
Sigma70_r3
PF04545
Sigma70_r4
function
adenyl nucleotide binding
function
ATP binding
function
nucleic acid binding
function
transcription factor activity
function
transcription regulator activity
function
binding
function
DNA binding
function
transcription initiation factor activity
function
sigma factor activity
function
nucleotide binding
function
purine nucleotide binding
process
regulation of transcription
process
regulation of transcription, DNA-dependent
process
transcription
process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
process
transcription, DNA-dependent
process
physiological process
process
regulation of biological process
process
metabolism
process
regulation of physiological process
process
transcription initiation
process
cellular metabolism
process
regulation of metabolism
process
regulation of cellular metabolism
process
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism
"
|
rdf:type | |
rdfs:label |
"methyl [(1E,5R)-5-{(3S)-3-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamate"
|
All properties reside in the graph file:///home/swish/src/ClioPatria/guidelines3/drugbank_small.nt
The resource does not appear as an object